Publications of Peter Stoilov, PhD

Regulation of anti-apoptotic signaling by Kruppel-like factors 4 and 5 mediates lapatinib resistance in breast cancer.
Farrugia MK, Sharma SB, Lin CC, McLaughlin SL, Vanderbilt DB, Ammer AG, Salkeni MA, Stoilov P, Agazie YM, Creighton CJ, Ruppert JM.
Cell Death Dis. 2015;6:e1699


Alternative splicing shapes the phenotype of a mutation in BBS8 to cause nonsyndromic Retinitis Pigmentosa.
Murphy D, Singh R, Kolandaivelu S, Ramamurthy V, Stoilov P.
Mol Cell Biol. 2015;35(10):1860-1870.


De novo prediction of PTBP1 binding and splicing targets reveals unexpected features of its RNA recognition and function.
Han A, Stoilov P, Linares AJ, Zhou Y, Fu XD, Black DL.
PLoS Comput Biol. 2014;10(1):e1003442


The splicing regulator PTBP2 controls a program of embryonic splicing required for neuronal maturation.
Li Q, Zheng S, Han A, Lin CH, Stoilov P, Fu XD, Black DL.
Elife. 2014;3:e01201


Medium throughput analysis of alternative splicing by fluorescently labeled rt-PCR.
Percifield R, Murphy D, Stoilov P.
Methods Mol Biol. 2014;1126:299-313.

Splice isoforms of phosducin-like protein control the expression of heterotrimeric G proteins.
Gao X, Sinha S, Belcastro M, Woodard C, Ramamurthy V, Stoilov P, Sokolov M.
J Biol Chem. 2013;288(36):25760-25768.


Pyrvinium pamoate changes alternative splicing of the serotonin receptor 2C by influencing its RNA structure.
Shen M, Bellaousov S, Hiller M, de La GP, Creamer TP, Malina O, Sperling R, Mathews DH, Stoilov P, Stamm S.
Nucleic Acids Res. 2013;41(6):3819-3832.


Characterization of novel inhibitors of HIV-1 replication that function via alteration of viral RNA processing and rev function.
Wong RW, Balachandran A, Haaland M, Stoilov P, Cochrane A.
Nucleic Acids Res. 2013;41(20):9471-9483.


The cardiotonic steroid digitoxin regulates alternative splicing through depletion of the splicing factors SRSF3 and TRA2B.
Anderson ES, Lin CH, Xiao X, Stoilov P, Burge CB, Black DL.
RNA. 2012;18(5):1041-1049.


Chromatin and epigenetic regulation of pre-mRNA processing.
Brown SJ, Stoilov P, Xing Y.
Hum Mol Genet. 2012;21(R1):R90-R96.


The splicing regulator Rbfox2 is required for both cerebellar development and mature motor function.
Gehman LT, Meera P, Stoilov P, Shiue L, O'Brien JE, Meisler MH, Ares M, Jr., Otis TS, Black DL.
Genes Dev. 2012;26(5):445-460.


The splicing regulator Rbfox1 (A2BP1) controls neuronal excitation in the mammalian brain.
Gehman LT, Stoilov P, Maguire J, Damianov A, Lin CH, Shiue L, Ares M, Jr., Mody I, Black DL.
Nat Genet. 2011;43(7):706-711.


A high-throughput screening strategy identifies cardiotonic steroids as alternative splicing modulators.
Stoilov P, Lin CH, Damoiseaux R, Nikolic J, Black DL.
Proc Natl Acad Sci USA. 2008;105(32):11218-11223.


MADS: a new and improved method for analysis of differential alternative splicing by exon-tiling microarrays.
Xing Y, Stoilov P, Kapur K, Han A, Jiang H, Shen S, Black DL, Wong WH.
RNA. 2008;14(8):1470-1479.


A post-transcriptional regulatory switch in polypyrimidine tract-binding proteins reprograms alternative splicing in developing neurons.
Boutz PL, Stoilov P, Li Q, Lin CH, Chawla G, Ostrow K, Shiue L, Ares M, Jr., Black DL.
Genes Dev. 2007;21(13):1636-1652.


MicroRNAs regulate the expression of the alternative splicing factor nPTB during muscle development.
Boutz PL, Chawla G, Stoilov P, Black DL.
Genes Dev. 2007;21(1):71-84.


Homologues of the Caenorhabditis elegans Fox-1 protein are neuronal splicing regulators in mammals.
Underwood JG, Boutz PL, Dougherty JD, Stoilov P, Black DL.
Mol Cell Biol. 2005;25(22):10005-10016.


A consensus CaMK IV-responsive RNA sequence mediates regulation of alternative exons in neurons.
Xie J, Jan C, Stoilov P, Park J, Black DL.
RNA. 2005;11(12):1825-1834.


Human tra2-beta1 autoregulates its protein concentration by influencing alternative splicing of its pre-mRNA.
Stoilov P, Daoud R, Nayler O, Stamm S.
Hum Mol Genet. 2004;13(5):509-524.

Regulation of TRKB surface expression by brain-derived neurotrophic factor and truncated TRKB isoforms.
Haapasalo A, Sipola I, Larsson K, Akerman KE, Stoilov P, Stamm S, Wong G, Castren E.
J Biol Chem. 2002;277(45):43160-43167.

Defects in pre-mRNA processing as causes of and predisposition to diseases.
Stoilov P, Meshorer E, Gencheva M, Glick D, Soreq H, Stamm S.
DNA Cell Biol. 2002;21(11):803-818.

YTH: a new domain in nuclear proteins.
Stoilov P, Rafalska I, Stamm S.
Trends Biochem Sci. 2002;27(10):495-497.

Analysis of the human TrkB gene genomic organization reveals novel TrkB isoforms, unusual gene length, and splicing mechanism.
Stoilov P, Castren E, Stamm S.
Biochem Biophys Res Commun. 2002;290(3):1054-1065.

Daoud R, Stoilov P, Stoss O, Hartmann O, Olbrich M, Stamm S.
Gene Ther Mol Biol. 2000;5:141-150.

An alternative-exon database and its statistical analysis.
Stamm S, Zhu J, Nakai K, Stoilov P, Stoss O, Zhang MQ.
DNA Cell Biol. 2000;19(12):739-756.

Stoss O, Stoilov P, Daoud R, Hartmann AM, Olbrich M, Stamm S.
Gene Ther Mol Biol. 2000;5:9-28.

The in vivo minigene approach to analyze tissue-specific splicing.
Stoss O, Stoilov P, Hartmann AM, Nayler O, Stamm S.
Brain Res Brain Res Protoc. 1999;4(3):383-394.

Repair pattern in the beta-globin gene cluster of human fibroblasts after ultraviolet irradiation.
Chakarov S, Stoilov P, Alexandrov A, Russev G.
Eur J Biochem. 1997;248(3):669-675.